iñigo prada luengo | Iñigo PRADA iñigo prada luengo Inigo Prada Luengo. Postdoc. Machine Learning. Universitetsparken 1. 2100 København Ø .
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0 · Iñigo Prada
1 · iprada (Iñigo Prada
2 · Sensitive detection of circular DNAs at single
3 · Replicative aging is associated with loss of genetic
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5 · Iñigo Prada Luengo
6 · Iñigo PRADA
7 · Inigo Prada Luengo – Staff – University of Copenhagen
8 · Inigo Prada Luengo
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2021. Replicative aging is associated with loss of genetic heterogeneity from extrachromosomal circular DNA in Saccharomyces cerevisiae. I Prada-Luengo, HD Møller, RA Henriksen, Q Gao, .Iñigo PRADA-LUENGO | Cited by 462 | of University of Copenhagen, Copenhagen | Read 23 publications | Contact Iñigo PRADA-LUENGO.
Copenhagen, Capital Region, Denmark. Postdoc in Precision Medicine at the Department of Computer Science (DIKU) & The Center for Health Data Science (SUND). I am working on . Circle-Map is an easy-to-use command line tool that implements the required pipeline to accurately detect circular DNA from circle enriched next generation sequencing .
View research profile and publications Employees in the research sections. Employees in the research sections. Algorithms and ComplexityInigo Prada Luengo. Postdoc. Machine Learning. Universitetsparken 1. 2100 København Ø .
This enables control-free, single-sample differential expression analysis. In breast cancer, we demonstrate how our approach selects marker genes and outperforms a state-of .Inigo Prada Luengo. Postdoc. Machine Learning. Universitetsparken 1. 2100 København Ø .
In yeast, circular ribosomal DNA (rDNA) accumulates dramatically as cells age, however little is known about the accumulation of other chromosome-derived circles or the .
A method for variant graph genotyping based on exact alignment of k-mers. C++ 1. DCC Public. Forked from dieterich-lab/DCC. DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation . Iñigo Prada-Luengo 1 , Henrik D Møller 1 2 , Rasmus A Henriksen 1 , Qian Gao 3 4 , Camilla Eggert Larsen 1 , Sefa Alizadeh 1 , Lasse Maretty 5 , Jonathan Houseley 3 , Birgitte Regenberg 1 Affiliations 1 Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen DK-2100, Denmark. 2 . Iñigo Prada-Luengo, Anders Krogh & Birgitte Regenberg. Department of Computer Science, University of Copenhagen, Universitetsparken 1, DK-2100, København Ø, Denmark. Anders Krogh. Department of Molecular Medicine, Aarhus University, Palle Juul-Jensens Boulevard 99, DK-8200, Aarhus N, Denmark. Henrik Devitt Møller 1 , Marghoob Mohiyuddin 2 , Iñigo Prada-Luengo 3 , M Reza Sailani 4 , Jens Frey Halling 3 , Peter Plomgaard 5 6 , Lasse Maretty 3 , Anders Johannes Hansen 7 , Michael P Snyder 4 , Henriette Pilegaard 3 , Hugo Y K Lam 2 , Birgitte Regenberg 8
Henrik Devitt Møller1, Marghoob Mohiyuddin2, Iñigo Prada-Luengo 1, M. Reza Sailani3, Jens Frey Halling1, Peter Plomgaard 4,5 , Lasse Maretty 1 , Anders Johannes Hansen 6 , Michael P. Snyder 3 .
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Henrik Devitt Møller, 1 Marghoob Mohiyuddin, 2 Iñigo Prada-Luengo, 1 M. Reza Sailani, 3 Jens Frey Halling, 1 Peter Plomgaard, 4, 5 Lasse Maretty, 1 Anders Johannes Hansen, 6 Michael P. Snyder, 3 Henriette Pilegaard, 1 Hugo Y. K. Lam, 2 and Birgitte Regenberg 1 Henrik Devitt Møller, Iñigo Prada-Luengo, Jens Frey Halling, Lasse Maretty, Henriette Pilegaard & Birgitte Regenberg Roche Sequencing Solutions, Belmont, CA, 94002, USA Marghoob Mohiyuddin .
Researchers hope to develop novel drugs for gastrointestinal disorders by fermenting feces Leire Iparraguirre 1 , Iñigo Prada-Luengo 2 , Birgitte Regenberg 2 , David Otaegui 1 Affiliations 1 Neurosciences Area, Biodonostia Health Research Institute, San Sebastián, Spain. Iñigo Prada-Luengo, Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen DK-2100, Denmark. . Prada-Luengo I., Gilbert M.T.P., Regenberg B.. Near-Random distribution of chromosome-derived circular DNA in the condensed genome of pigeons and the larger, more repeat-rich human genome.
Iñigo Prada‑Luengo1 . Prada‑Luengo et al. Genome Biology Page 3 of 17 In summary, our model of normal gene expression drastically improves dierential expression analysis by yielding fewer false positives and extending the analysis to sin-gle cancer samples (N-of .
Saverio D'Amico, Lorenzo Dall'Olio, Cesare Rollo, Patricia Alonso, Iñigo Prada-Luengo, Daniele Dall'Olio, Claudia Sala, Matteo Bersanelli, Elisabetta Sauta, Marilena Bicchieri, Pierandrea Morandini, Tobia Tommasini, Victor Savevski, Lin-Pierre Zhao, Uwe Platzbecker, Maria Diez-Campelo, Valeria Santini, Pierre Fenaux, Torsten Haferlach, Anders . @InigoPrada (Iñigo Prada‑Luengo), @viki_schu (Viktoria Schuster). Funding. Open access funding provided by Royal Library, Copenhagen University Library AK is funded by two grants from the . Circular DNA has recently been identified across different species including human normal and cancerous tissue, but short-read mappers are unable to align many of the reads crossing circle junctions and hence limits their detection from short-read sequencing data. Here, we propose a new method, Circle-Map, that guides the realignment of partially aligned reads .
Iñigo Prada-Luengo, 1 Anders Krogh, 1, 2 Lasse Maretty, # 3 and Birgitte Regenberg # 1 Iñigo Prada-Luengo 1 Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 København N, Denmark2021. Replicative aging is associated with loss of genetic heterogeneity from extrachromosomal circular DNA in Saccharomyces cerevisiae. I Prada-Luengo, HD Møller, RA Henriksen, Q Gao, CE.
Iñigo PRADA-LUENGO | Cited by 462 | of University of Copenhagen, Copenhagen | Read 23 publications | Contact Iñigo PRADA-LUENGO.
Copenhagen, Capital Region, Denmark. Postdoc in Precision Medicine at the Department of Computer Science (DIKU) & The Center for Health Data Science (SUND). I am working on Machine Learning. Circle-Map is an easy-to-use command line tool that implements the required pipeline to accurately detect circular DNA from circle enriched next generation sequencing experiments. Circle-Map is implemented in python3.6 and it is freely available at https://github.com/iprada/Circle-Map.
iprada (Iñigo Prada
View research profile and publications Employees in the research sections. Employees in the research sections. Algorithms and ComplexityInigo Prada Luengo. Postdoc. Machine Learning. Universitetsparken 1. 2100 København Ø . This enables control-free, single-sample differential expression analysis. In breast cancer, we demonstrate how our approach selects marker genes and outperforms a state-of-the-art method. Furthermore, significant genes identified by the model are enriched in driver genes across cancers.
Inigo Prada Luengo. Postdoc. Machine Learning. Universitetsparken 1. 2100 København Ø . In yeast, circular ribosomal DNA (rDNA) accumulates dramatically as cells age, however little is known about the accumulation of other chromosome-derived circles or the contribution of such circles to genetic variation in aged cells.
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